| PO | Team | W | D | L | Goals | PTS | ||
|---|---|---|---|---|---|---|---|---|
| 1 |  Mito Hollyhock | 18 | 10 | 6 | 51 : 30 | 64 | ||
| 2 |  V-Varen Nagasaki | 17 | 12 | 5 | 56 : 41 | 63 | ||
| 3 |  JEF Utd Chiba | 17 | 8 | 9 | 44 : 31 | 59 | ||
| 4 |  Vegalta Sendai | 15 | 13 | 6 | 43 : 32 | 58 | ||
| 5 |  Tokushima Vortis | 16 | 9 | 9 | 38 : 21 | 57 | ||
| 6 |  Omiya Ardija | 16 | 9 | 9 | 50 : 34 | 57 | ||
| 7 |  Sagan Tosu | 16 | 8 | 10 | 44 : 38 | 56 | ||
| 8 |  Jubilo Iwata | 16 | 6 | 12 | 52 : 47 | 54 | ||
| 9 |  Iwaki SC | 13 | 10 | 11 | 51 : 41 | 49 | ||
| 10 |  FC Imabari | 12 | 13 | 9 | 41 : 36 | 49 | ||
| 11 |  Consadole Sapporo | 14 | 4 | 16 | 41 : 56 | 46 | ||
| 12 |  Montedio Yamagata | 12 | 7 | 15 | 50 : 49 | 43 | ||
| 13 |  Ventforet Kofu | 11 | 10 | 13 | 36 : 39 | 43 | ||
| 14 |  Blaublitz Akita | 10 | 9 | 15 | 40 : 50 | 39 | ||
| 15 |  Oita | 8 | 14 | 12 | 25 : 36 | 38 | ||
| 16 |  Fujieda MYFC | 9 | 10 | 15 | 38 : 44 | 37 | ||
| 17 |  Roasso Kumamoto | 9 | 8 | 17 | 40 : 53 | 35 | ||
| 18 |  Renofa Yamaguchi | 5 | 14 | 15 | 31 : 43 | 29 | ||
| 19 |  Kataller Toyama | 6 | 9 | 19 | 25 : 46 | 27 | ||
| 20 |  Ehime FC | 3 | 11 | 20 | 33 : 62 | 20 | 
| Promotion | |
| Promotion Playoffs | |
| Relegation | 
| PO | Team | W | D | L | Goals | PTS | ||
|---|---|---|---|---|---|---|---|---|
| 1 |  V-Varen Nagasaki | 10 | 6 | 2 | 31 : 18 | 36 | ||
| 2 |  Mito Hollyhock | 9 | 6 | 2 | 28 : 14 | 33 | ||
| 3 |  Sagan Tosu | 9 | 5 | 3 | 24 : 19 | 32 | ||
| 4 |  Jubilo Iwata | 10 | 1 | 6 | 27 : 22 | 31 | ||
| 5 |  Omiya Ardija | 8 | 5 | 4 | 24 : 17 | 29 | ||
| 6 |  JEF Utd Chiba | 8 | 4 | 4 | 24 : 17 | 28 | ||
| 7 |  Tokushima Vortis | 8 | 4 | 5 | 16 : 12 | 28 | ||
| 8 |  Vegalta Sendai | 7 | 6 | 4 | 22 : 17 | 27 | ||
| 9 |  Iwaki SC | 6 | 6 | 5 | 27 : 19 | 24 | ||
| 10 |  Oita | 5 | 8 | 4 | 13 : 13 | 23 | ||
| 11 |  Fujieda MYFC | 6 | 5 | 7 | 23 : 25 | 23 | ||
| 12 |  Consadole Sapporo | 7 | 2 | 8 | 20 : 29 | 23 | ||
| 13 |  Montedio Yamagata | 6 | 4 | 7 | 26 : 25 | 22 | ||
| 14 |  Roasso Kumamoto | 6 | 3 | 8 | 19 : 23 | 21 | ||
| 15 |  Renofa Yamaguchi | 4 | 8 | 5 | 18 : 18 | 20 | ||
| 16 |  Ventforet Kofu | 5 | 5 | 7 | 18 : 21 | 20 | ||
| 17 |  FC Imabari | 3 | 8 | 6 | 19 : 22 | 17 | ||
| 18 |  Blaublitz Akita | 4 | 5 | 8 | 17 : 24 | 17 | ||
| 19 |  Kataller Toyama | 3 | 3 | 10 | 13 : 21 | 12 | ||
| 20 |  Ehime FC | 1 | 3 | 13 | 13 : 31 | 6 | 
| Promotion | |
| Promotion Playoffs | |
| Relegation | 
| PO | Team | W | D | L | Goals | PTS | ||
|---|---|---|---|---|---|---|---|---|
| 1 |  FC Imabari | 9 | 5 | 3 | 22 : 14 | 32 | ||
| 2 |  Mito Hollyhock | 9 | 4 | 4 | 23 : 16 | 31 | ||
| 3 |  Vegalta Sendai | 8 | 7 | 2 | 21 : 15 | 31 | ||
| 4 |  JEF Utd Chiba | 9 | 4 | 5 | 20 : 14 | 31 | ||
| 5 |  Tokushima Vortis | 8 | 5 | 4 | 22 : 9 | 29 | ||
| 6 |  Omiya Ardija | 8 | 4 | 5 | 26 : 17 | 28 | ||
| 7 |  V-Varen Nagasaki | 7 | 6 | 3 | 25 : 23 | 27 | ||
| 8 |  Iwaki SC | 7 | 4 | 6 | 24 : 22 | 25 | ||
| 9 |  Sagan Tosu | 7 | 3 | 7 | 20 : 19 | 24 | ||
| 10 |  Jubilo Iwata | 6 | 5 | 6 | 25 : 25 | 23 | ||
| 11 |  Ventforet Kofu | 6 | 5 | 6 | 18 : 18 | 23 | ||
| 12 |  Consadole Sapporo | 7 | 2 | 8 | 21 : 27 | 23 | ||
| 13 |  Blaublitz Akita | 6 | 4 | 7 | 23 : 26 | 22 | ||
| 14 |  Montedio Yamagata | 6 | 3 | 8 | 24 : 24 | 21 | ||
| 15 |  Oita | 3 | 6 | 8 | 12 : 23 | 15 | ||
| 16 |  Kataller Toyama | 3 | 6 | 9 | 12 : 25 | 15 | ||
| 17 |  Fujieda MYFC | 3 | 5 | 8 | 15 : 19 | 14 | ||
| 18 |  Roasso Kumamoto | 3 | 5 | 9 | 21 : 30 | 14 | ||
| 19 |  Ehime FC | 2 | 8 | 7 | 20 : 31 | 14 | ||
| 20 |  Renofa Yamaguchi | 1 | 6 | 10 | 13 : 25 | 9 | 
| Promotion | |
| Promotion Playoffs | |
| Relegation |